ZORAN NIKOLOSKI : rechercher sur Z-Library

Zoran Nikoloski, Patrick May, Joachim Selbig

Année:

2008

Langue:

english

Fichier:

PDF, 407 KB

english, 2008

Algebraic connectivity may explain the evolution of gene regulatory networks

Journal:

Breuer, David, Nowak, Jacqueline, Ivakov, Alexander, Somssich, Marc, Persson, Staffan, Nikoloski, Zoran

Année:

2010

Langue:

english

Fichier:

PDF, 371 KB

english, 2010

System-wide organization of actin cytoskeleton determines organelle transport in hypocotyl plant cells

Journal:

Proceedings of the National Academy of Sciences

Année:

2017

Langue:

english

Fichier:

PDF, 8.40 MB

english, 2017

Integrative field scale phenotyping for investigating metabolic components of water stress within a vineyard

Gago, Jorge, Fernie, Alisdair R., Nikoloski, Zoran, Tohge, Takayuki, Martorell, Sebastiá, Escalona, José Mariano, Ribas-Carbó, Miquel, Flexas, Jaume, Medrano, Hipólito

Journal:

Plant Methods

Année:

2017

Langue:

english

Fichier:

PDF, 2.09 MB

english, 2017

Genetic diversity of strawberry germplasm using metabolomic biomarkers

Vallarino, José G., de Abreu e Lima, Francisco, Soria, Carmen, Tong, Hao, Pott, Delphine M., Willmitzer, Lothar, Fernie, Alisdair R., Nikoloski, Zoran, Osorio, Sonia

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 3.46 MB

english, 2018

Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida

Ferrari, Camilla, Proost, Sebastian, Janowski, Marcin, Becker, Jörg, Nikoloski, Zoran, Bhattacharya, Debashish, Price, Dana, Tohge, Takayuki, Bar-Even, Arren, Fernie, Alisdair, Stitt, Mark, Mutwil, Ma

Journal:

Nature Communications

Année:

2019

Langue:

english

Fichier:

PDF, 2.79 MB

english, 2019

Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities

Sergio Grimbs, Anne Arnold, Aneta Koseska, Jürgen Kurths, Joachim Selbig, Zoran Nikoloski

Journal:

Zoran Nikoloski, Sergio Grimbs, Sebastian Klie, Joachim Selbig

Année:

2011

Langue:

english

Fichier:

PDF, 846 KB

english, 2011

Complexity of automated gene annotation

Journal:

Sabrina Hempel, Aneta Koseska, Zoran Nikoloski, Jürgen Kurths

Année:

2011

Langue:

english

Fichier:

PDF, 497 KB

english, 2011

Unraveling gene regulatory networks from time-resolved gene expression data – a measures comparison study

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2011

Metabolic control and regulation of the tricarboxylic acid cycle in photosynthetic and heterotrophic plant tissues

WAGNER L. ARAÚJO, ADRIANO NUNES-NESI, ZORAN NIKOLOSKI, LEE J. SWEETLOVE, ALISDAIR R. FERNIE

Journal:

Plant, Cell & Environment

Année:

2012

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2012

Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns

Jan Lisec, Lilla Römisch-Margl, Zoran Nikoloski, Hans-Peter Piepho, Patrick Giavalisco, Joachim Selbig, Alfons Gierl, Lothar Willmitzer

Journal:

The Plant Journal

Année:

2011

Langue:

english

Fichier:

PDF, 570 KB

english, 2011

Modeling alternatives for interpreting the change in oxygen-consumption rates during hypoxic conditions

Zoran Nikoloski, Joost T. van Dongen

Journal:

New Phytologist

Année:

2011

Langue:

english

Fichier:

PDF, 89 KB

english, 2011

A new network model explains the evolution of plant-specific metabolic networks

Zoran Nikoloski, Patrick May, Joachim Selbig

Journal:

Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology

Année:

2009

Langue:

english

Fichier:

PDF, 58 KB

english, 2009

A quantitative comparison of Calvin–Benson cycle models

Anne Arnold, Zoran Nikoloski

Journal:

Trends in Plant Science

Année:

2011

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2011

Network analysis: tackling complex data to study plant metabolism

Toubiana, David, Fernie, Alisdair R., Nikoloski, Zoran, Fait, Aaron

Journal:

Trends in Biotechnology

Année:

2013

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2013

Robustness of metabolic networks: A review of existing definitions

Abdelhalim Larhlimi, Sylvain Blachon, Joachim Selbig, Zoran Nikoloski

Journal:

Max Sajitz-Hermstein, Zoran Nikoloski

Année:

2011

Langue:

english

Fichier:

PDF, 466 KB

english, 2011

Restricted cooperative games on metabolic networks reveal functionally important reactions

Journal:

Jost Neigenfind, Sergio Grimbs, Zoran Nikoloski

Année:

2012

Langue:

english

Fichier:

PDF, 759 KB

english, 2012

On the relation between reactions and complexes of (bio)chemical reaction networks

Journal:

Georg Basler, Sergio Grimbs, Zoran Nikoloski

Année:

2013

Langue:

english

Fichier:

PDF, 205 KB

english, 2013

Optimizing metabolic pathways by screening for feasible synthetic reactions

Journal:

Sabrina Kleessen, Zoran Nikoloski

Année:

2012

Langue:

english

Fichier:

PDF, 426 KB

english, 2012

Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations

Journal:

BMC Systems Biology

Année:

2012

Langue:

english

Fichier:

PDF, 405 KB

english, 2012

Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana

Kleessen, Sabrina, Antonio, Carla, Sulpice, Ronan, Laitinen, Roosa, Fernie, Alisdair R., Stitt, Mark, Nikoloski, Zoran

Journal:

Nature Communications

Année:

2012

Langue:

english

Fichier:

PDF, 639 KB

english, 2012

Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation inEscherichia coli

Nadine Töpfer, Szymon Jozefczuk, Zoran Nikoloski

Journal:

BMC Systems Biology

Année:

2012

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2012

Metabolite profiling and network analysis reveal coordinated changes in grapevine water stress response

Hochberg, Uri, Degu, Asfaw, Toubiana, David, Gendler, Tanya, Nikoloski, Zoran, Rachmilevitch, Shimon, Fait, Aaron

Journal:

BMC Plant Biology

Année:

2013

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2013

In search for an accurate model of the photosynthetic carbon metabolism

Arnold, Anne, Nikoloski, Zoran

Journal:

Mathematics and Computers in Simulation

Année:

2014

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2014

Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics

Hu, Chaoyang, Shi, Jianxin, Quan, Sheng, Cui, Bo, Kleessen, Sabrina, Nikoloski, Zoran, Tohge, Takayuki, Alexander, Danny, Guo, Lining, Lin, Hong, Wang, Jing, Cui, Xiao, Rao, Jun, Luo, Qian, Zhao, Xian

Journal:

Scientific Reports

Année:

2014

Langue:

english

Fichier:

PDF, 1.80 MB

english, 2014

From systems biology to systems chemistry: metabolomic procedures enable insight into complex chemical reaction networks in water

Méret, Michaël, Kopetzki, Daniel, Degenkolbe, Thomas, Kleessen, Sabrina, Nikoloski, Zoran, Tellstroem, Verena, Barsch, Aiko, Kopka, Joachim, Antonietti, Markus, Willmitzer, Lothar

Journal:

RSC Advances

Année:

2014

Langue:

english

Fichier:

PDF, 752 KB

english, 2014

Flux profiling of photosynthetic carbon metabolism in intact plants

Heise, Robert, Arrivault, Stéphanie, Szecowka, Marek, Tohge, Takayuki, Nunes-Nesi, Adriano, Stitt, Mark, Nikoloski, Zoran, Fernie, Alisdair R

Journal:

Nature Protocols

Année:

2014

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2014

Data-driven reconstruction of directed networks

Sabrina Hempel,Aneta Koseska,Zoran Nikoloski

Journal:

The European Physical Journal B / Condensed Matter and Complex Systems

Année:

2013

Langue:

english

Fichier:

PDF, 1.39 MB

english, 2013

Metabolite Profiling and Integrative Modeling Reveal Metabolic Constraints for Carbon Partitioning under Nitrogen Starvation in the Green Algae Haematococcus pluvialis

Recht, Lee, Töpfer, Nadine, Batushansky, Albert, Sikron, Noga, Gibon, Yves, Fait, Aaron, Nikoloski, Zoran, Boussiba, Sammy, Zarka, Aliza

Journal:

Journal of Biological Chemistry

Année:

2014

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2014

Probabilistic Inductive Classes of Graphs

KEJŽAR, NATAŠA, NIKOLOSKI, ZORAN, BATAGELJ, VLADIMIR

Journal:

Journal of Mathematical Sociology

Année:

2008

Langue:

english

Fichier:

PDF, 490 KB

english, 2008

Metabolic efficiency underpins performance trade-offs in growth of Arabidopsis thaliana

Kleessen, Sabrina, Laitinen, Roosa, Fusari, Corina M., Antonio, Carla, Sulpice, Ronan, Fernie, Alisdair R., Stitt, Mark, Nikoloski, Zoran

Journal:

Nature Communications

Année:

2014

Langue:

english

Fichier:

PDF, 466 KB

english, 2014

Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions

Florian, Alexandra, Nikoloski, Zoran, Sulpice, Ronan, Timm, Stefan, Araújo, Wagner L., Tohge, Takayuki, Bauwe, Hermann, Fernie, Alisdair R.

Journal:

Molecular Plant

Année:

2014

Langue:

english

Fichier:

PDF, 2.38 MB

english, 2014

PageRank-based identification of signaling crosstalk from transcriptomics data: the case of Arabidopsis thaliana

Omranian, Nooshin, Mueller-Roeber, Bernd, Nikoloski, Zoran

Journal:

Molecular BioSystems

Année:

2012

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2012

Inferring gene functions through dissection of relevance networks: interleaving the intra- and inter-species views

Klie, Sebastian, Mutwil, Marek, Persson, Staffan, Nikoloski, Zoran

Journal:

Molecular BioSystems

Année:

2012

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2012

Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds

Toubiana, David, Batushansky, Albert, Tzfadia, Oren, Scossa, Federico, Khan, Asif, Barak, Simon, Zamir, Daniel, Fernie, Alisdair Robert, Nikoloski, Zoran, Fait, Aaron

Journal:

The Plant Journal

Année:

2015

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2015

Biological Cluster Evaluation for Gene Function Prediction

Klie, Sebastian, Nikoloski, Zoran, Selbig, Joachim

Journal:

Journal of Computational Biology

Année:

2014

Langue:

english

Fichier:

PDF, 1.73 MB

english, 2014

Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures

Florian, Alexandra, Timm, Stefan, Nikoloski, Zoran, Tohge, Takayuki, Bauwe, Hermann, Araújo, Wagner L., Fernie, Alisdair R.

Journal:

Journal of Integrative Plant Biology

Année:

2014

Langue:

english

Fichier:

PDF, 8.44 MB

english, 2014

Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment

Kleessen, Sabrina, Irgang, Susann, Klie, Sebastian, Giavalisco, Patrick, Nikoloski, Zoran

Journal:

The Plant Journal

Année:

2015

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2015

Utilizing systems biology to unravel stomatal function and the hierarchies underpinning its control

MEDEIROS, DAVID B., DALOSO, DANILO M., FERNIE, ALISDAIR R., NIKOLOSKI, ZORAN, ARAÚJO, WAGNER L.

Journal:

Plant, Cell & Environment

Année:

2015

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2015

Young Genes out of the Male: An Insight from Evolutionary Age Analysis of the Pollen Transcriptome

Cui, Xiao, Lv, Yang, Chen, Miaolin, Nikoloski, Zoran, Twell, David, Zhang, Dabing

Journal:

Molecular Plant

Année:

2015

Langue:

english

Fichier:

PDF, 2.16 MB

english, 2015

Differential metabolic and coexpression networks of plant metabolism

Omranian, Nooshin, Kleessen, Sabrina, Tohge, Takayuki, Klie, Sebastian, Basler, Georg, Mueller-Roeber, Bernd, Fernie, Alisdair R., Nikoloski, Zoran

Journal:

Trends in Plant Science

Année:

2015

Langue:

english

Fichier:

PDF, 242 KB

english, 2015

Segmentation of biological multivariate time-series data

Omranian, Nooshin, Mueller-Roeber, Bernd, Nikoloski, Zoran

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2015

Integration of metabolomics data into metabolic networks

TÃ¶pfer, Nadine, Kleessen, Sabrina, Nikoloski, Zoran

Journal:

Scossa, Federico, Brotman, Yariv, de Abreu e Lima, Francisco, Willmitzer, Lothar, Nikoloski, Zoran, Tohge, Takayuki, Fernie, Alisdair R.

Année:

2015

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2015

Genomics-based strategies for the use of natural variation in the improvement of crop metabolism

Journal:

Plant Science

Année:

2015

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2015

Variability of Metabolite Levels Is Linked to Differential Metabolic Pathways in Arabidopsis's Responses to Abiotic Stresses

Töpfer, Nadine, Scossa, Federico, Fernie, Alisdair, Nikoloski, Zoran, Haugh, Jason M.

Journal:

PLoS Computational Biology

Année:

2014

Langue:

english

Fichier:

PDF, 719 KB

english, 2014

Compromise of Multiple Time-Resolved Transcriptomics Experiments Identifies Tightly Regulated Functions

Klie, Sebastian, Caldana, Camila, Nikoloski, Zoran

Journal:

Kleessen, Sabrina, Fernie, Alisdair R., Nikoloski, Zoran

Année:

2012

Langue:

english

Fichier:

PDF, 2.08 MB

english, 2012

A Computational Framework for Evaluating the Efficiency of Arabidopsis Accessions in Response to Nitrogen Stress Reveals Important Metabolic Mechanisms

Journal:

Sajitz-Hermstein, Max, Nikoloski, Zoran, Ruppin, Eytan

Année:

2012

Langue:

english

Fichier:

PDF, 602 KB

english, 2012

Structural Control of Metabolic Flux

Journal:

PLoS Computational Biology

Année:

2013

Langue:

english

Fichier:

PDF, 738 KB

english, 2013

Generalized framework for context-specific metabolic model extraction methods

Journal: